Thursday, May 31, 2012

Formatting the Bibliography


Bibliography



Debra:  Please use a consistent format for the references.  We have talked about it….  Use the following format:



Mohr JT, Gribble GW, Lin SS, Eckenhoff RG and Robert S. Cantor RS (2005) Anesthetic potency of two novel synthetic polyhydric alkanols longer than the n-alkanol cutoff: evidence for a bilayer-mediated mechanism of anesthesia? J Med Chem. 48:4172-4176.





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Agata, K., Soejima, Y., Kato, K., Kobayashi, C., Umasono, Y., Watanabe, K. (1998) Structure of the planarian central nervous system (CNS) revealed by neuronal cell markers.  Zoolog Sci. Jun 1;15(3):433-40.

Baker, D., Deats, S., Boor, P., Pruitt, J., Pagán, O.R. (2011) Minimal structural requirements of alkyl γ-lactones capable of antagonizing the cocaine-induced motility decrease in planarians. Pharmacology Biochemistry and Behavior Volume 100, Issue 1, November 2011, Pages 174-179

Bawdekar AS, Kelkar GR, Bhattacharyya SC. (1966) Terpenoids LXXXIX absolute configuration of parthenolide.  Tetrahedron Letters. 7:1225-1227.



Benya, E., Leal-Zanchet, A., Santos, W., Hauser, J., Erdtmann, B. (2007)  Chromosome polymorphism and complements in populations of Girardia species (Platyhelminthes, Tricladia, Paludicola) from southern Brazil. Brazilian Journal of Braz. J. Biol. Vol.67 no.4 supp1.0 Sao Carlos Dec. 2007.



Carranza,S., Littlewood, D T., Clough, K A., Ruiz-Trillo, I., Baguñà, J., and Riutort, M.(1998)  A robust molecular phylogeny of the Tricladida (Platyhelminthes: Seriata) with a discussion on morphological synapomorphies.  Proc Biol Sci. April 7; 265(1396): 631=640.


Calatayud, J. Gonzalez, A. (2005) History of the Development and Evolution of Local Anesthesia Since the Coca Leaf. Anesthesiology. V 98, No 6, jun 2005.



Callier, S., Snapyan, M., Le Crom, S., Prou, D., Vincent, J.D., Vernier, P. (2003) Evolution and cell biology of dopamine receptors in vertebrates. Biol Cell. 95(7):489-502.



Carlsson, A. et al. (1957) 3,4-dihydroxyphenylalanine and 5-hydroxytryptophan as reserpine antagonists. Nature 180, 1200



Chong, T., Stary, J., Want, Y., Newmark, P. (2011)  Molecular markers to characterize the hermaphroditic reproductive system of the planarian Schmidtea mediterranea.  BMC Developmental Biology 2011, 11:69 doi:10.1186/1471-213X-11-69.





Eckenhoff RG, Tanner JW, Johansson JS. (1999) Steric hindrance is not required for n-alkanol cutoff in soluble proteins. Mol Pharmacol 56:414-418.



Franks NP and Lieb WR. (1985) Mapping of general anesthetic target sites provides a molecular basis for cutoff effects. Nature.  316:359-351.



Gainetdinov, R. R., Caron, M. G., (2003) Monoamine transporters: from genes to behavior. Annu Rev Pharmacol Toxicol 43:261-284.



Gentile, L., Cebria, F., Bartscherer, K., (2011) The planarian flatworm: an in vivo model for stem cell biology and nervous system regeneration . Published by The Company of Biologists Ltd PMCID: PMC3014342

Graczyk, Thomas (2011) An Investigation of the Effects of the Local Anesthetic Procainamide and the Sesquiterpene Lactones Parthenolide, Santonin, and Costunolide at the Human Dopamine Transporter Using a Fluorescence-Based Uptake Assay. T. Graczyk’s Master’s Thesis Copyright 2011 Unpublished at this writing.

Guzman, M., Rossi, R., Neelakantan, S., Li, X., Corbett, C., Hassane, D., Becker, M., Bennett, J., Sullivan, E., Lachowicz, J., Vaughan, A., Sweeney, C., Matthews, W., Carroll, M., Liesveld, J., Crooks, P., and Jordan, C. (2007) An orally bioavailable parthenolide analog selectively eradicates acute myelogenous leukemia stem and progenitor cells.  Blood. Published  online September 5, 2007.  Blood December 15, 2007 vol. 110 no. 13 442 7-4435.

Hall, F.S., Sora I, D.R., Gonova, J., Li, X.F., Goeb, M., Uhl, G.R. (2004). Molecular mechanisms underlying the rewarding effects of cocaine. Ann NY Acad Sci. 1025:47-56.

Hertting, G., Axelrod, J. (1961) Fate of tritiated noradrenaline at the sympathetic nerve-endings. Nature. 192:172-3.



Hertting, G., Axelrod, J., Patrick, R.W. (1961) Actions of cocaine and tyramine on the uptake and release of H3-norepinephrine in the heart. Biochem Pharmacol. 8:246-8.

Huson, D., Scornavacca, C., (2011) A Survey of Combinatorial Methods for Phylogenetic Networks. , Genome Biol Evol  3 23-35. doi: 10.1093/gbe/evq077

Hyman, S. E. (2005) Neurotransmitters. Cur Bio 15:R 154-R 158.



Iversen, Leslie.(2009) Introduction to neuropsychopharmacology.  Oxford University Press.

Jacobs, D., Hughes, N., Fitzgibbon, S., Winchell, C. (2005) Terminal addition, the Cambrian radiation and the Phanerozoic evolution of bilaterian form. EVOLUTION & DEVELOPMENT 7:6, 498–514

Jayanthi, L., Apparsundaram ,  S., Malone, M., Ward, E., Miller, D., Eppler, M. Blakely, R. (1998) The Caenorhabditis elegans GeneT23G5.5 Encodes an Antidepressant- and Cocaine-Sensitive Dopamine Transporter.  Molecular Pharmacology October 1, 1998 vol. 54 no. 4 601-609.

Koehntop, D., Chia , L, Van Bergen, F. (1977) Effects of Pharmacologic Alterations of Adrenergic Mechanisms by Cocaine, Tropolone, Aminophylline, and Ketamine on Epinephrine-induced Arrhythmias during Halothane-Nitrous Oxide Anesthesia. Anesthesiology Volume 46 - Issue 2 pp: 83-158

Koller,C. (1941) History of cocaine as a local anesthetic, JAMA 117: 1284

Kurian, M., Zhen, J., Cheng, S., Santosh S., Mordekar, R., Jardine, P., Morgan, N., Meyer, E., Tee, L., Pasha, D., Wassmer, E., Heales, S., Paul Gissen, P., Reith, M., Eamonn R. Maher, E. (2009)Homozygous loss-of-function mutations in the gene encoding the dopamine transporter are associated with infantile parkinsonism-dystonia Published in Volume 119, Issue 6  J Clin Invest. 2009; 119(6):1595–1603 doi:10.1172/JCI39060

Lau, A. H., Knakievicz, T., Prá, D. and Erdtmann, B. (2007) Freshwater planarians as novel organisms for genotoxicity testing: Analysis of chromosome aberrations. Environmental and Molecular Mutagenesis, 48: 475–482. doi: 10.1002/em.20307





Margotta V, Caronti B, Meco G, Merante A, Ruggieri S, Venturini G and Palladini G.(1997) Effects of cocaine treatment on the nervous system of planaria (Dugesia gonocephala s.l.). Histochemical and ultrastructural observations. Eur J Histochem 41:223-30.



Mateo, Y. Budygin, E., Johansen, C. (2004)  Role of Serotonin in Cocaine Effects in Mice with Reduced Dopamine Transporter Function. National Academy of Sciences



 Material Safety Data Sheet MSDS #Gcc1-7  Dimethyl Sulfoxide (DMSO) August 20, 2004

McLure, H.and Rubin, A. (2005) Review of Local Anesthetic Agents.  Anestesia 2005 ; 73: 59-74.

Mineta, K., Masumi, N., Cebria, F., Ikeo, K., Agata, K., Gojobori, T. (2003) Origin and evolutionary process of the CNS elucidated by comparative genomics analysis of planarian ESTs. PNAS June 24, 2003 vol. 100 no. 13 7666-7671



book Mitman G and Fausto-Sterling A (1992) "Whatever happened to Planaria? C.M. Child

            and the physiology of inheritance". In: Clarke AE and Fujimura JH (eds)The Right Tools for the Job: At Work in Twentieth-Century Life Sciences, pp. 172–197. Princeton, NJ: Princeton University Press.



Mohr JT, Gribble GW, Lin SS, Eckenhoff RG and Robert S. Cantor RS. (2005) Anesthetic potency of two novel synthetic polyhydric alkanols longer than the n-alkanol cutoff: evidence for a bilayer-mediated mechanism of anesthesia? J Med Chem. 48:4172-4176.





Moreno y Maiz, T. (1868) Recherche cliniques et physiologiques sur l'érythoxylon coca du Perou et la cocaine. Thèse, 1868, Paris.



Musto, D. (1991) Opium, cocaine and marijuana in American history. SciAm. 1991                                                                                                   

             Jul;265(1):40-7



Nathanson, J., Hunnicutt, E., Lakshmi, K., Scavone, C. (1993) Cocaine as a Naturally Occurring Insecticide. PNAS Page 9645-9658.



Newmark, P. A. and A. Sánchez Alvarado. (2002)  Not your father’s planarian: a classic model enters the era of functional genomics. Nature Reviews Genetics 3: 210-219.



O’Donnell, M. J., (1997) Mechanisms of Excretion and Ion Transport in Invertebrates. Supplement 30: Handbook of Physiology, Comparative Physiology. 10.1002/cphy.cp130217



Osborne, M., (2007) William Stewart Halsted: his life and contributions to surgery. The Lancet Oncology, Volume 8, Issue 3, Pages 256 - 265.



Pagán OR (2005) Synthetic local anesthetics as alleviators of cocaine inhibition of the human dopamine transporter.  Ph.D. Dissertation, Field of Pharmacology and Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY



Pagán OR, Rowlands AL, Fattore AL, Coudron T, Urban KR, Bidja AH, Eterovic VA. (2009) A cembranoid  from tobacco prevents the expressionof nicotine-induced withdrawal behavior in planarian worms. Eur J Pharmacol 615:118–124.



Pagán OR, Rowlands AL and Urban KR. (2006)Toxicity and behavioral effects of dimethylsulfoxide in planaria. Neurosci Lett 2006; 407:274-8.



Pagán OR, Rowlands AL, Azam M, Urban KR, Bidja AH, Roy DM, Feeney RB, Afshari LK. Reversal of cocaine-induced planarian behavior by parthenolide and related sesquiterpene lactones. Pharmacol Biochem Behav 2008; 89:160-170.



Palladini G, Ruggeri S, Stocchi F, De Pandis MF, Venturini G, Margotta V. (1996) A pharmacological study of cocaine activity in planaria. Comp Biochem Physiol C Pharmacol Toxicol Endocrinol 1996; 115:41-5.



Perfecto, I. and Vandermeer, J. (2008) Biodiversity Conservation in Tropical Agroecosystems. Annals of the New York Academy of Sciences, 1134: 173–200. doi: 10.1196/annals.1439.011



Personal Correspondence with Dr. Chen May 4, 2011.



Raffa RB and Desai P. (2005) Description and quantification of cocaine withdrawal signs in Planaria. Brain Res 2005; 1032:200-2.



Raffa RB, Holland LJ and Schulingkamp RJ.(2001) Quantitative assessment of dopamine D2 antagonist activity using invertebrate (Planaria) locomotion as a functional endpoint. J Pharmacol Toxicol Methods 2001; 45:223-6.



Raffa RB and Valdez JM. (2001) Cocaine withdrawal in Planaria. Eur J Pharmacol 2001; 430:143-5.



Reddien PW and Sanchez Alvarado A. (2004) Fundamentals of planarian regeneration. Annu Rev Cell Dev Biol 2004; 20:725–57.

 


Rieger, R. M.m (1981) Morphology of the Turbellaria at the Ultrastructural Level.


 


RM Rieger  Morphology of the Tubellaria at the Ultrastructural Level Hydrobiologia, 1981 - Springer



Ribeiro P El-Shehabi F and Patocka N. (2005) Classical transmitters and their receptors in flatworms. Parasitology 131:S19–S40.



Rowlands AL, Pagán OR. (2008) Parthenolide prevents the expression of cocaine-induced withdrawal behavior in planarians. Eur J Pharmacol. 583:170-172.



Dr.  Sanchez lecture. (2010) “Molecular Basis of Regeneration; Planarians as a Model System. http://www.youtube.com/watch?v=VQddTRqlD88&feature=relmfu

Sarnat HB and Netsky MG. (1985)  “The Brain of the planarian as the Ancestor of the Human Brain.  The Canadian Journal of Neurological Sciences.   12:296-302.

Sarnat HB and Netsky MG. (2002) When does a ganglion become a brain? Evolutionary origin of the central nervous system. Semin Pediatr Neurol. 9:240-53.



Scholz, A., (2002)  Mechanisms of (local) anaesthetics on voltagegated sodium and other ion channels. British Journal of Anaesthesia.

Sarnat HB and Netsky MG. The brain of the planarian as the ancestor of the human brain. Can J Neurol Sci 1985; 12:296-302.



Sofia M.C. Robb, Eric Ross and Alejandro Sánchez Alvarado. (2007)  SmedGD; the Schmidtea mediterranea Genome Database. Nucleic Acids Research, 36:D599-D606, doi:10.1093/nar/gkm684 (e-publication date: September 18, 2007)

Schwartz, D., Bloom, D., Castro, R., Pagán, O., Jimenez-Rivera, C.  (2011)  Parthenolide Blocks Cocaine’s Effect on Spontaneous Firing Activity of Dopaminergic Neurons in the Ventral Tegmental Area. Neuropharmacology Volume 9, Number 1, March, 2011, pp. 17-20(4)

Suhara T  Takahashi H,Takano H, Kodaka F, Arakawa R, Yamada M, Otsuka T, Hirano Y, Kikyo H, Okubo Y, Kato M, Obata T, Ito H,  (2010) Contribution of dopamine D1 and D2 receptors to amygdala activity in human. J Neurosci 30:3043–3047

 TaqMan Ribosomal RNA Control Reagents Protocol (2002) Applied Biosystems.

"Thomas H. Morgan - Biography". (2011)Nobelprize.orghttp://nobelprize.org/nobel_prizes/medicine/laureates/1933/morgan-bio.html

Vandam LD (1987) Some aspects of the history of local anesthesia. Handbook of Clin. Pharmacol 81:1-19

Volkow, N., Wang, D., Fowler, J., Logan, J. (1997) Decreased striatal dopaminergic responsiveness in detoxified cocaine-dependent subjects. Nature, Vol 386(6627), Apr 1997, 830-833.

Venturini, G, Stocchi, F., Margotta, V., Ruggieri, S., Bravi, D., Bellantuono, P., Palladini, G. (1989) A Pharmacological Study of Dopaminergic Receptors in Planaria. Neuropharmacology Vol. 28. No. 12. pp. 1377-1382.



Volkow, N. D., Fowler, J. S., Wang, G.-J., Hitzemann, R., Logan, J., Schlyer, D. J., Dewey, S. L. and Wolf, A. P. (1993) Decreased dopamine D2 receptor availability is associated with reduced frontal metabolism in cocaine abusers. Synapse, 14: 169–177. doi: 10.1002/syn.890140210



Von Oettingen ,W. F. (1933)  the earliest suggestion of the use of cocaine for local anesthesia. Ann Med Hist (NS)5: 275-280, 1933

Yentis, S., Vlassakov, K. (1999) Vassily von Anrep, Forgotten Poineer of Regional Anesthesia. Anesthesiology: March, 1999-Volume 90-Issue 3-p890-895.



















Two Peer-Reviewed Papers That are Products of This Effort



Baker, D., Deats, S., Boor, P., Pruitt, J., Pagán, O. (2011) Minimal structural requirements of alkyl γ-lactones capable of antagonizing the cocaine-induced motility decrease in planarians. Accepted for Publication 12 August, 2011, published online version 22 August, 2011, Published Volume 100, Issue 1, pages 174-179  Pharmacology, Biochemistry, and Behavior



 Oné R. Pagán, Debra Baker, Sean Deats, Erica Montgomery, Matthew Tenaglia, Clinita Randolph, Dharini Kotturu, Christopher Tallarida, Daniel Bach, Galia Wilk, Scott Rawls And Robert B. Raffa (2012) Planarians in pharmacology: Parthenolide is a specific behavioral antagonist of cocaine in the planarian Girardia tigrina. (Accepted, December 22, 2011, Made available online and in print March 15, 2012, published March 22, 2012) International Journal of Developmental Biology (2012) 56: 193-196








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